Please use this identifier to cite or link to this item: http://hdl.handle.net/2440/112258
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dc.contributor.authorYu, C.en
dc.contributor.authorBaune, B.en
dc.contributor.authorWong, M.en
dc.contributor.authorLicinio, J.en
dc.date.issued2018en
dc.identifier.citationJournal of Affective Disorders, 2018; 232:305-309en
dc.identifier.issn0165-0327en
dc.identifier.issn1573-2517en
dc.identifier.urihttp://hdl.handle.net/2440/112258-
dc.descriptionAvailable online 24 February 2018en
dc.description.abstractBackground: Major depressive disorder (MDD) is a leading contributor to global disease burden. Recent studies have shown that genetic factors play significant roles in the susceptibility to this condition; however, the underlying genetic basis currently remains largely unknown. Short tandem repeat (STR) has been proposed as an explanatory factor in the “missing heritability” of complex diseases or traits. Methods: We investigated STR variations from 15 MDD patients and 10 ethnically matched healthy controls based on their deep whole-genome sequencing (WGS) data. The lobSTR software was used to computationally determine STRs. Results: The results of the Mexican-American sample showed that STRs are significantly richer in healthy controls than in MDD cases on each of the 23 chromosomes (all false discovery rates, FDR P-values< 0.0062); while for the Australian of European-ancestry sample, there was no statistically significant STRs difference between MDD cases and controls. Limitations: High quality WGS costs limited obtaining larger datasets. Conclusions: This preliminary work is the first study that STR variations are applied to investigate MDD based on WGS data. The results on Mexican-American population may imply that within the same ancestry, targeted sequencing on a specific chromosome or region of genome would be sufficient for examining the relationship between STR and MDD. Further studies should examine larger sequencing datasets on other ethnic groups.en
dc.description.statementofresponsibilityChenglong Yu, Bernhard T. Baune, Ma-Li Wong, Julio Licinioen
dc.language.isoenen
dc.publisherElsevier BVen
dc.rights© 2018 Elsevier B.V. All rights reserved.en
dc.subjectMajor depressive disorder; Heritability; Psychiatric genetics; Whole-genome sequencing; Genetic markeren
dc.titleInvestigation of short tandem repeats in major depression using whole-genome sequencing dataen
dc.typeJournal articleen
dc.identifier.rmid0030083354en
dc.identifier.doi10.1016/j.jad.2018.02.046en
dc.relation.granthttp://purl.org/au-research/grants/nhmrc/1051931en
dc.relation.granthttp://purl.org/au-research/grants/nhmrc/1060524en
dc.identifier.pubid398802-
pubs.library.collectionPsychiatry publicationsen
pubs.library.teamDS03en
pubs.verification-statusVerifieden
pubs.publication-statusPublisheden
dc.identifier.orcidBaune, B. [0000-0001-6548-426X]en
Appears in Collections:Psychiatry publications

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