Please use this identifier to cite or link to this item: http://hdl.handle.net/2440/77466
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dc.contributor.authorBuchanan, M.en
dc.contributor.authorBurton, R.en
dc.contributor.authorDhugga, K.en
dc.contributor.authorRafalski, A.en
dc.contributor.authorTingey, S.en
dc.contributor.authorShirley, N.en
dc.contributor.authorFincher, G.en
dc.date.issued2012en
dc.identifier.citationBMC Plant Biology, 2012; 12(1):1-19en
dc.identifier.issn1471-2229en
dc.identifier.issn1471-2229en
dc.identifier.urihttp://hdl.handle.net/2440/77466-
dc.descriptionExtent: 19p.en
dc.description.abstractBACKGROUND Endo-(1,4)-β-glucanase (cellulase) glycosyl hydrolase GH9 enzymes have been implicated in several aspects of cell wall metabolism in higher plants, including cellulose biosynthesis and degradation, modification of other wall polysaccharides that contain contiguous (1,4)-β-glucosyl residues, and wall loosening during cell elongation. RESULTS The endo-(1,4)-β-glucanase gene families from barley (Hordeum vulgare), maize (Zea mays), sorghum (Sorghum bicolor), rice (Oryza sativa) and Brachypodium (Brachypodium distachyon) range in size from 23 to 29 members. Phylogenetic analyses show variations in clade structure between the grasses and Arabidopsis, and indicate differential gene loss and gain during evolution. Map positions and comparative studies of gene structures allow orthologous genes in the five species to be identified and synteny between the grasses is found to be high. It is also possible to differentiate between homoeologues resulting from ancient polyploidizations of the maize genome. Transcript analyses using microarray, massively parallel signature sequencing and quantitative PCR data for barley, rice and maize indicate that certain members of the endo-(1,4)-β-glucanase gene family are transcribed across a wide range of tissues, while others are specifically transcribed in particular tissues. There are strong correlations between transcript levels of several members of the endo-(1,4)-β-glucanase family and the data suggest that evolutionary conservation of transcription exists between orthologues across the grass family. There are also strong correlations between certain members of the endo-(1,4)-β-glucanase family and other genes known to be involved in cell wall loosening and cell expansion, such as expansins and xyloglucan endotransglycosylases. CONCLUSIONS The identification of these groups of genes will now allow us to test hypotheses regarding their functions and joint participation in wall synthesis, re-modelling and degradation, together with their potential role in lignocellulose conversion during biofuel production from grasses and cereal crop residues.en
dc.description.statementofresponsibilityMargaret Buchanan, Rachel A Burton, Kanwarpal S Dhugga, Antoni J Rafalski, Scott V Tingey, Neil J Shirley and Geoffrey B Fincheren
dc.language.isoenen
dc.publisherBioMed Central Ltd.en
dc.rights© 2012 Buchanan et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.en
dc.subjectBiofuels; Cell walls; Cellulases; Cellulose synthesis; Co-expression; Grasses; Stem strengthen
dc.titleEndo-(1,4)-β-Glucanase gene families in the grasses: temporal and spatial Co-transcription of orthologous genesen
dc.title.alternativeEndo-(1,4)-beta-Glucanase gene families in the grasses: temporal and spatial Co-transcription of orthologous genesen
dc.typeJournal articleen
dc.identifier.rmid0020125632en
dc.contributor.organisationAustralian Centre for Plant Functional Genomics (ACPFG)en
dc.identifier.doi10.1186/1471-2229-12-235en
dc.identifier.pubid21185-
pubs.library.collectionAustralian Centre for Plant Functional Genomics publicationsen
pubs.verification-statusVerifieden
pubs.publication-statusPublisheden
Appears in Collections:Australian Centre for Plant Functional Genomics publications

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