Please use this identifier to cite or link to this item: https://hdl.handle.net/2440/137968
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Type: Journal article
Title: Automated pancreatic islet viability assessment for transplantation using bright-field deep morphological signature
Author: Habibalahi, A.
Campbell, J.M.
Walters, S.N.
Mahbub, S.B.
Anwer, A.G.
Grey, S.T.
Goldys, E.M.
Citation: Computational and Structural Biotechnology Journal, 2023; 21:1851-1859
Publisher: Elsevier BV
Issue Date: 2023
ISSN: 2001-0370
2001-0370
Statement of
Responsibility: 
Abbas Habibalahi, Jared M. Campbell, Stacey N. Walters, Saabah B. Mahbub, Ayad G. Anwer, Shane T. Grey, Ewa M. Goldys
Abstract: Islets transplanted for type-1 diabetes have their viability reduced by warm ischemia, dimethyloxalylglycine (DMOG; hypoxia model), oxidative stress and cytokine injury. This results in frequent transplant failures and the major burden of patients having to undergo multiple rounds of treatment for insulin independence. Presently there is no reliable measure to assess islet preparation viability prior to clinical transplantation. We investigated deep morphological signatures (DMS) for detecting the exposure of islets to viability compromising insults from brightfield images. Accuracies ranged from 98 % to 68 % for; ROS damage, pro-inflammatory cytokines, warm ischemia and DMOG. When islets were disaggregated to single cells to enable higher throughput data collection, good accuracy was still obtained (83-71 %). Encapsulation of islets reduced accuracy for cytokine exposure, but it was still high (78 %). Unsupervised modelling of the DMS for islet preparations transplanted into a syngeneic mouse model was able to predict whether or not they would restore glucose control with 100 % accuracy. Our strategy for constructing DMS' is effective for the assessment of islet pre-transplant viability. If translated into the clinic, standard equipment could be used to prospectively identify non-functional islet preparations unable to contribute to the restoration of glucose control and reduce the burden of unsuccessful treatments.
Keywords: AI, artificial intelligence
DMOG, dimethyloxalylglycine
DMS, deep morphological signatures
Deep morphological signature
ECG, electrocardiogram
EEG, electroencephalogram
EMCCD, electron multiplying charge coupling device
FD, Fisher Distance
GSIS, glucose stimulated insulin secretion
IoU, intersection over union
MEG, magnetoencephalography
MRI, magnetic resonance imaging
PCA, principal component analysis
Pancreatic islet
ROS, reactive oxygen species
SI, swarm intelligence
SVM, support vector machine
Transplantation
Rights: © 2023 The Author(s). Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/li censes/by-nc-nd/4.0/).
DOI: 10.1016/j.csbj.2023.02.039
Grant ID: http://purl.org/au-research/grants/arc/DP170101863
http://purl.org/au-research/grants/nhmrc/GNT1130222
http://purl.org/au-research/grants/nhmrc/GNT1146493
http://purl.org/au-research/grants/nhmrc/GNT1189235
http://purl.org/au-research/grants/nhmrc/GNT1140691
Published version: http://dx.doi.org/10.1016/j.csbj.2023.02.039
Appears in Collections:Public Health publications

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